GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004287-TA|BGIBMGA004287-PA|undefined
         (123 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.57 
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    22   1.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 34  IGTIASNDRLLRSFSVTR 51
           IGT+A+ND +L S S  +
Sbjct: 174 IGTLATNDNILESISYVK 191


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 37  IASNDRLLRSFSVTRGVTATSQIVDLRYTAPNSMR 71
           I+SN    RS S  R  +  S+  DLR+   NS R
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYR 246


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 30  LVLSIGTIASNDRLLRSFSVTRGV 53
           L L++G I +NDR+L   S+   V
Sbjct: 249 LGLALGPIRNNDRILYFHSLASRV 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,990
Number of Sequences: 429
Number of extensions: 604
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 140,377
effective HSP length: 51
effective length of query: 72
effective length of database: 118,498
effective search space:  8531856
effective search space used:  8531856
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)