GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004286-TA|BGIBMGA004286-PA|undefined
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   6.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 92  GGLGSTFAAFDITNAAGRGLNY 113
           GG+     AFD+T  +G  + +
Sbjct: 176 GGITQCIGAFDVTLESGERVTF 197


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query: 27 RRSTLNLGVIGN 38
          R++T+N+G IG+
Sbjct: 39 RQATINIGTIGH 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,880
Number of Sequences: 429
Number of extensions: 789
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)