GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004285-TA|BGIBMGA004285-PA|undefined
         (122 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   1.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   1.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   2.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   2.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   3.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.9  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 5  FTLLFVLVIVTAVAADE 21
          + LLFVLV +T V A++
Sbjct: 4  YILLFVLVTITCVIAED 20


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 5  FTLLFVLVIVTAVAADE 21
          + LLFVLV +T V A++
Sbjct: 4  YILLFVLVTITCVIAED 20


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
          1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 11 LVIVTAVAADEEAGVRSNGRP---DLVIGTITSQDSLIRSFRFNRPASPSSQSHFHRI 65
          ++IV A   + EAG+  NG+     L+  T+  +  ++   + +    P S++ F  I
Sbjct: 40 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 97


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 11  LVIVTAVAADEEAGVRSNGRP---DLVIGTITSQDSLIRSFRFNRPASPSSQSHFHRI 65
           ++IV A   + EAG+  NG+     L+  T+  +  ++   + +    P S++ F  I
Sbjct: 56  VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 113


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 11  LVIVTAVAADEEAGVRSNGRP---DLVIGTITSQDSLIRSFRFNRPASPSSQSHFHRI 65
           ++IV A   + EAG+  NG+     L+  T+  +  ++   + +    P S++ F  I
Sbjct: 113 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 170


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 31  PDLV-IGTITSQDSLIRSFRFNRPASPSSQSHFHRIAMAAGVRISAITA 78
           PD V +  +TS    + S + +R A    +S    +  AA V +  +TA
Sbjct: 916 PDAVDLTQLTSVSEWLASIKMSRYAESFERSGVTTLEAAARVTVQELTA 964


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 11  LVIVTAVAADEEAGVRSNGRP---DLVIGTITSQDSLIRSFRFNRPASPSSQSHFHRI 65
           ++IV A   + EAG+  NG+     L+  T+  +  ++   + +    P S++ F  I
Sbjct: 113 VLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEI 170


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 101 VNLEARNARGRGFSYNVQIWGR 122
           +N+     +G G S NVQ++G+
Sbjct: 358 LNVLGNIVQGNGDSVNVQLYGQ 379


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 15  TAVAADEEAGVRSNGRPD 32
           +AVA  +  G R NGR D
Sbjct: 471 SAVAQAQLGGERQNGRKD 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,398
Number of Sequences: 429
Number of extensions: 900
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 122
length of database: 140,377
effective HSP length: 51
effective length of query: 71
effective length of database: 118,498
effective search space:  8413358
effective search space used:  8413358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)