GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004284-TA|BGIBMGA004284-PA|IPR007087|Zinc finger,
C2H2-type
         (1180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    37   8e-04
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    30   0.097
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.13 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    29   0.17 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    29   0.22 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    28   0.39 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   8.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   8.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   8.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc finger
            domain-Z1 isoform protein.
          Length = 111

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 1044 CKICKKMFMNHNSLAVHMTNAHPQ-CKLPIFKCDECPSSYPKLLQLQHHKRVFHNVTGPN 1102
            C+ C K+  +   L  H+ N H +  K PI  C+ C   Y  L  L++HK ++H     N
Sbjct: 5    CEPCNKILTSLTRLRRHIQNVHTRPSKEPI--CNICKRVYSSLNSLRNHKSIYHRQHSKN 62

Query: 1103 RE 1104
             +
Sbjct: 63   EQ 64


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
            protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.097
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1044 CKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKRVFHNVTGPNR 1103
            C+ C K F    +L+VH    H + + P +KCD C  ++    +L  H R+ H    P++
Sbjct: 122  CEYCSKSFSVKENLSVHR-RIHTK-ERP-YKCDVCERAFEHSGKLHRHMRI-HTGERPHK 177



 Score = 27.9 bits (59), Expect = 0.52
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 1044 CKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKR 1093
            C +C K F+    L +HM   H   K P + C  C   +    QL+ H R
Sbjct: 178  CTVCSKTFIQSGQLVIHM-RTHTGEK-P-YVCKACGKGFTCSKQLKVHTR 224



 Score = 26.6 bits (56), Expect = 1.2
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 564 KENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRL-TGHTRSLITPSSSTLM 622
           KENLS+        + T    + CDVC   F     L  H R+ TG      T  S T  
Sbjct: 132 KENLSVHRR-----IHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKT-- 184

Query: 623 PYAQNSNILSSLLPVKHLADQVGKLSSI-GGSGPGFTHQQNVMINIQAYPG 672
            + Q+  +      V H+    G+   +    G GFT  + + ++ + + G
Sbjct: 185 -FIQSGQL------VIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTG 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 210 DDEDEGSANEDSRGDNDXXXXXXXXXXXXSAA-----ENDSGDEQPDNAKGQDSDDSDGL 264
           DD++E    ED RG ++             A      E D G  +   +   D+D +   
Sbjct: 281 DDDEENEEEEDGRGQSEAEKRLKLDEDADGAVSPLRREKDRGSREYPTSNATDTDGTKER 340

Query: 265 VEK-AIAKAKISTALKRLQQNATAKAETVPAAPIKTVPMQIKPSGRPVIKQTP---KRGD 320
            E+ A+ +  ++  L R++     K E +  AP           G P I  TP     G 
Sbjct: 341 TEEVALDRTPVTQGLLRVK-----KEEELQEAP--------SCGGGPTILTTPGLDSDGI 387

Query: 321 NLPMLAKIAPQQSIETSAPVTVASVRT-PTPE 351
            LP     A   +    AP  + S RT P PE
Sbjct: 388 RLPCREVEAAATARNVVAPFLIGSRRTSPPPE 419


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc finger
            domain-Z3 isoform protein.
          Length = 92

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 1044 CKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKRVFH 1096
            C  C++ F  + SL  H  + H Q    ++ C+ C   Y     L  HK + H
Sbjct: 8    CPYCRRNFSCYYSLKRHFQDKHEQSD-TLYVCEFCNRRYRTKNSLTTHKSLQH 59


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein protein.
          Length = 81

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 1043 SCKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKR 1093
            SCK C+K++++  +L +H+      C     KC  C  ++ +   LQ H R
Sbjct: 18   SCKYCEKVYVSLGALKMHIRTHTLPC-----KCHLCGKAFSRPWLLQGHIR 63


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc finger
            domain-Z2 isoform protein.
          Length = 71

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1041 MLSCKICKKMFMNHNSLAVHMTNAHPQCKLPIFKCDECPSSYPKLLQLQHHKRVFH 1096
            + +C++C K+  +  SL  H+ + H + +   ++C  C   Y     L  H   +H
Sbjct: 5    LFTCQLCGKVLCSKASLKRHVADKHAE-RQEEYRCVICERVYCSRNSLMTHIYTYH 59


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
            beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 1048 KKMFMNHNSLAVHMTNAHPQCKLPIFKCDECP 1079
            +    N ++L  H+   +P  + P F+C E P
Sbjct: 95   RDFLQNLDALHDHLGTLYPGMRAPSFRCTERP 126


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 1050 MFMNHNSLAVHMTNAHPQCKLPIFKCD 1076
            M  + N + V++T  HP   L ++ C+
Sbjct: 511  MNFSKNPVTVNLTKLHPPADLVVYACN 537


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
            beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 1048 KKMFMNHNSLAVHMTNAHPQCKLPIFKCDECP 1079
            +    N ++L  H+   +P  + P F+C E P
Sbjct: 95   RDFLQNLDALHDHLGTLYPGMRAPSFRCTERP 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,827
Number of Sequences: 429
Number of extensions: 13912
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 21
length of query: 1180
length of database: 140,377
effective HSP length: 65
effective length of query: 1115
effective length of database: 112,492
effective search space: 125428580
effective search space used: 125428580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)