GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004283-TA|BGIBMGA004283-PA|undefined
         (450 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.74 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.2  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   9.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   9.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.74
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 49  NDTVPEELSVWKEYENLKKRLQEAESNLKQNKQELHLLIE 88
           N  + ++ S W +Y  + K +Q+ +  LK+ + E+   IE
Sbjct: 489 NTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEIDFKIE 528


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 329 KKDELKRALSSLNVTDRKIANVRECLTAVFG 359
           +K  L   LSS N  +R +AN  E L   FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 329 KKDELKRALSSLNVTDRKIANVRECLTAVFG 359
           +K  L   LSS N  +R +AN  E L   FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 284 RVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVT 343
           +V+ +K L+EELK++ G    +    ++++   ++I  V+K++      +  A  +++VT
Sbjct: 40  QVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVT 99


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 391 YDEKRSSRKMKLQLSFDLDASTSDSFNDRAENGTPTFADELKIYLESFHMDKNRKL 446
           Y   R  R   +  S+D  +S SDS +       P   D   I+ ES+  + +R +
Sbjct: 28  YKHSRRHRDFTVAESYDASSSNSDSLS----MTIPPSIDRSSIHEESYLAESSRSI 79


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 129 QETMNIAKSLSYIERTEENE 148
           +ET  I K LS+I+RT   E
Sbjct: 86  EETRQIKKVLSHIQRTYPKE 105


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 129 QETMNIAKSLSYIERTEENE 148
           +ET  I K LS+I+RT   E
Sbjct: 86  EETRQIKKVLSHIQRTYPKE 105


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 117 VSEQLQSKKTDLQETMNIAKSLSYIERTEEN 147
           V E   S K D+ + +N+   ++  ++ EEN
Sbjct: 64  VKELANSAKRDINDVLNVLYFINKNDKYEEN 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,389
Number of Sequences: 429
Number of extensions: 3712
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 450
length of database: 140,377
effective HSP length: 60
effective length of query: 390
effective length of database: 114,637
effective search space: 44708430
effective search space used: 44708430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)