GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004281-TA|BGIBMGA004281-PA|undefined
         (553 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.13 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    27   0.40 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   1.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   3.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.0  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   6.6  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   6.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 82  NPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPNER 121
           N K+ K    ++ ES  + FY +F Y      C  NP+++
Sbjct: 939 NKKVYKQNDYIVDESSSSSFYSSFLYKSSESSC--NPDQK 976


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 13/141 (9%)

Query: 176 STSRGLSYRGANFNRYTPMGQRSSRCPDRRYTIFWPKDHVSPRLH-------LAQTSHNN 228
           ++S  L  R  +F   +    R  RC   R   +  KD    +LH         +TS   
Sbjct: 212 TSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKR 271

Query: 229 KAKKNPRKTDKRESENDFKDIKEDISETKDNSQLEATSTSQQKDIITDDQMPSTSAAVNQ 288
            ++   R+    ++EN ++  +E  S+ +   ++E   + + K I +      ++  ++ 
Sbjct: 272 YSRSREREQRSYKNENSYRKYRE-TSKERSRDRIERERSREPKIISS-----LSNNTIHN 325

Query: 289 AGLKKKRLYSTVLSTSAPSPI 309
               KK  Y+ +     P P+
Sbjct: 326 NNYNKKLYYNIINIEQIPVPV 346


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 209 FWPKDHVSPRLHLAQTSH-NNKAKKNPRKTDK 239
           +WP D ++  +H+A  SH +N+ K N   T++
Sbjct: 165 WWPYDILNCTIHIASWSHGSNEIKLNSLDTEQ 196


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 70  RTTSNQTGQENGNPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPN 119
           R TS +  ++    +  K  K +   S    +  N+Y + + +K Y N N
Sbjct: 282 RETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNIN 331


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 244 NDFKDIKEDISETKDNSQLEATSTSQQKDIITD 276
           +DFKD+       KD   L A +  Q   +I D
Sbjct: 85  SDFKDVDPIFGTIKDLEDLTAEAKKQNLKVILD 117


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/96 (17%), Positives = 36/96 (37%)

Query: 176 STSRGLSYRGANFNRYTPMGQRSSRCPDRRYTIFWPKDHVSPRLHLAQTSHNNKAKKNPR 235
           ++S  L  R   F   +    R   C   R   +  KD    +LH  +     +     R
Sbjct: 212 TSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSRKR 271

Query: 236 KTDKRESENDFKDIKEDISETKDNSQLEATSTSQQK 271
            +  RE E      K +  + ++ S+  + + ++++
Sbjct: 272 YSRSREREQKLYKNKREYRKYRETSKERSRNRTERE 307


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/96 (17%), Positives = 36/96 (37%)

Query: 176 STSRGLSYRGANFNRYTPMGQRSSRCPDRRYTIFWPKDHVSPRLHLAQTSHNNKAKKNPR 235
           ++S  L  R   F   +    R   C   R   +  KD    +LH  +     +     R
Sbjct: 212 TSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSRKR 271

Query: 236 KTDKRESENDFKDIKEDISETKDNSQLEATSTSQQK 271
            +  RE E      K +  + ++ S+  + + ++++
Sbjct: 272 YSRSREREQKLYKNKREYRKYRETSKERSRNRTERE 307


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,237
Number of Sequences: 429
Number of extensions: 7257
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 553
length of database: 140,377
effective HSP length: 61
effective length of query: 492
effective length of database: 114,208
effective search space: 56190336
effective search space used: 56190336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)