GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004277-TA|BGIBMGA004277-PA|IPR008210|Phosphoenolpyruvate
carboxykinase, N-terminal, IPR000437|Prokaryotic membrane lipoprotein
lipid attachment site, IPR008209|Phosphoenolpyruvate carboxykinase
(GTP)
         (641 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...   196   5e-52
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.63 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   7.7  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score =  196 bits (478), Expect = 5e-52
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query: 287 IVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAI 346
           I+ ITNP+GKKRYI AAFPSACGKTNLAMM PTLPGYK+ECVGDDIAWMKFDK+G LRAI
Sbjct: 1   ILAITNPKGKKRYITAAFPSACGKTNLAMMKPTLPGYKIECVGDDIAWMKFDKEGRLRAI 60

Query: 347 NSENGFFGIAPGTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGM 393
           N E GFFG+APGTS+ATNP AM T+FKNT+FTNVA T +GG++WEG+
Sbjct: 61  NPEYGFFGVAPGTSSATNPNAMKTIFKNTIFTNVASTSDGGIFWEGL 107


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 491 MVMHDPFAMRPFFGY--NFGDYLKHWLSMPQPGRKMPKIFHVNWFRKDEQGKFLWPG--F 546
           ++M+  F +  + G   N  +YL H  +    GR   K      FR D    +L PG  F
Sbjct: 413 IIMYIAFIILQYAGLLRNRSEYLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSF 472

Query: 547 GE 548
           GE
Sbjct: 473 GE 474


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 533 FRKDEQGKFLWPGFGE 548
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 533 FRKDEQGKFLWPGFGE 548
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,712
Number of Sequences: 429
Number of extensions: 8423
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 641
length of database: 140,377
effective HSP length: 62
effective length of query: 579
effective length of database: 113,779
effective search space: 65878041
effective search space used: 65878041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)