GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004274-TA|BGIBMGA004274-PA|undefined
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 61  IQTKNKPADERPGSGERGSPIVKRLAPKLNGNI 93
           I+++N+ AD   GS   G+P+  +L  +  GN+
Sbjct: 520 IKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 61  IQTKNKPADERPGSGERGSPIVKRLAPKLNGNI 93
           I+++N+ AD   GS   G+P+  +L  +  GN+
Sbjct: 520 IKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 61  IQTKNKPADERPGSGERGSPIVKRLAPKLNGNI 93
           I+++N+ AD   GS   G+P+  +L  +  GN+
Sbjct: 520 IKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 22/76 (28%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 23  KYHAPTPPDKVLTDDECEMEKDKXXXXXXXXXXXXDDCIQTKNKPADERPGSGERGSPIV 82
           KY      D    D E  + K               D I TK K    R        P V
Sbjct: 301 KYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYLNNELGPAV 360

Query: 83  KRLAPKLNGNIDRSSV 98
           KR+A   N N DR +V
Sbjct: 361 KRIALNNNAN-DRLTV 375


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,052
Number of Sequences: 429
Number of extensions: 2502
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)