GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004272-TA|BGIBMGA004272-PA|IPR000595|Cyclic
nucleotide-binding, IPR005821|Ion transport
         (532 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.29 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    27   0.39 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   1.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   2.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 367 YNNEDILISRGEEPKGIYILVSGLLEATYIPPDTDVKESI 406
           YNN D +I +G      +I+  G +  T   PDT  ++ I
Sbjct: 241 YNNGDYIIRQGARGDTFFIISRGQVRVTIKQPDTPEEKYI 280


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 0.39
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 203 DSNWNKLDFFIIVMATAGLPLPKQGFVTGEQEVCHLLPQLVDNV 246
           DSNW   + FII     G  + + G V+ + EV  ++  +VD V
Sbjct: 30  DSNWIITNSFIIFTMQTGFGMLESGCVSLKNEVNIMMKNVVDIV 73


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 306 FLDEMEYTLLVNAIQDKVQQCRHRGSLVAPSAPETQLRAVSWLQGNERLAEFFL 359
           F  E + +  +  I + V  C H G +     PE  L A        +LA+F L
Sbjct: 5   FYSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGL 58


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 449 ESAVQAYFIKMHIVKEAFVLA 469
           +S+VQ Y +  H +KEAFV A
Sbjct: 581 KSSVQNYSLAKHQLKEAFVKA 601


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,825
Number of Sequences: 429
Number of extensions: 5716
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 4
length of query: 532
length of database: 140,377
effective HSP length: 61
effective length of query: 471
effective length of database: 114,208
effective search space: 53791968
effective search space used: 53791968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)