GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004268-TA|BGIBMGA004268-PA|IPR007087|Zinc finger,
C2H2-type
         (881 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   4.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   8.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 450 KETIEALLSQWTEEEIPESELSIVKPGEDVACFNSTVIEET 490
           +E I  LL +  + +   +EL + K  +D+A F   +++ET
Sbjct: 447 QEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNLLQET 487


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 450 KETIEALLSQWTEEEIPESELSIVKPGEDVACFNSTVIEET 490
           +E I  LL +  + +   +EL + K  +D+A F   +++ET
Sbjct: 153 QEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLLQET 193


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 624 PVPSAATPEHSKEQKLFAIFDKPNPGISTPTTKEKTS 660
           P PS++ P+ +K  K+F I  K N  + +  +++ T+
Sbjct: 346 PPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTT 382


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 252 SPTQMLKTPHNTTETIVSPPKIHNR 276
           +P   L  P+N   T+VSPP    R
Sbjct: 886 NPALALAEPYNQRGTVVSPPPTKRR 910


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 252 SPTQMLKTPHNTTETIVSPPKIHNR 276
           +P   L  P+N   T+VSPP    R
Sbjct: 924 NPALALAEPYNQRGTVVSPPPTKRR 948


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 449 EKETIEALLSQWTEEEIPESELSIVKPGEDVACFNSTVIEETSQLFEPVTAVPVKADLPQ 508
           E+ T  A  S   E+E P   + ++   +    F +TV+EE +  F  V    +  +   
Sbjct: 425 EEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQN 484

Query: 509 DNAIIVELGADPAQV--KPQIDTNVS 532
                   GA    V  +P ++TN S
Sbjct: 485 GRKDSGYDGAASTAVIHEPVVETNSS 510


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 485 TVIEETSQLFEPVTAVPVKADLPQD 509
           +++  T+ +FE VT  P+  + P D
Sbjct: 260 SILNRTNNIFELVTVEPILTERPSD 284


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 175 DTESCSSSLKDLNFDSDSGTDSKENTPTKSLRR 207
           D  SC + ++ L+   +  T  +EN+P   LR+
Sbjct: 206 DESSCRADIRILDLSRNEITRLQENSPLLDLRQ 238


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 580 IERELEMLDEQIFKIAQSNNISAEAVLKSTEI 611
           I++E + ++ +I    +SN +    VLK+TEI
Sbjct: 461 IDKETKDMNLEISTRPKSNTVENACVLKNTEI 492


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,057
Number of Sequences: 429
Number of extensions: 10203
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 10
length of query: 881
length of database: 140,377
effective HSP length: 64
effective length of query: 817
effective length of database: 112,921
effective search space: 92256457
effective search space used: 92256457
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)