GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004267-TA|BGIBMGA004267-PA|undefined
         (247 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 54  KKDAEYEEAHKLKNMIRGLDDDEVGFLDLVERTKAKAAQQISIEEQKEMQEFRER 108
           +KD  YE+ H  K  +  L++           ++++  +Q S + +KE +++RER
Sbjct: 14  EKDRRYEKLHNEKEKL--LEERT----SRKRYSRSREREQNSYKNEKEYRKYRER 62


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 54  KKDAEYEEAHKLKNMIRGLDDDEVGFLDLVERTKAKAAQQISIEEQKEMQEFRER 108
           +KD  YE+ H  K  +  L++           ++++  +Q S + +KE +++RER
Sbjct: 14  EKDRRYEKLHNEKEKL--LEERT----SRKRYSRSREREQNSYKNEKEYRKYRER 62


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 159 NQKDAPPAKTNGVVSNNVATSKIQAD 184
           N  DA P   +  V NN  +SK++ +
Sbjct: 202 NNNDATPTDFSMGVKNNHVSSKVEGN 227


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,341
Number of Sequences: 429
Number of extensions: 2161
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 247
length of database: 140,377
effective HSP length: 56
effective length of query: 191
effective length of database: 116,353
effective search space: 22223423
effective search space used: 22223423
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)