GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004266-TA|BGIBMGA004266-PA|IPR001507|Endoglin/CD105
antigen
         (432 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.94 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   6.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   6.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   6.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 335 QTGRGPFAPEANGLIKIGETMTLVVSVTGDPGFDIQVKECIAR 377
           +T  G +  EA   I  G +  + +SV   P F+I++K   AR
Sbjct: 747 KTNEGYYLCEAVNGIGAGLSAVIFISVQAPPHFEIKLKNQTAR 789


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 271 AYLENVLVLQNEPGIQEVWDHIRRVRCLWEGNLTKQLVSSLSVGMLNQITSNFSGD 326
           ++LE + ++     +Q  W     +   W   +T ++++SLS   L++I     GD
Sbjct: 480 SFLERLNLIFMSSSLQ--WSSTHTLDVAWRRKVTIEILNSLSATKLSKIILMQFGD 533


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 271 AYLENVLVLQNEPGIQEVWDHIRRVRCLWEGNLTKQLVSSLSVGMLNQITSNFSGD 326
           ++LE + ++     +Q  W     +   W   +T ++++SLS   L++I     GD
Sbjct: 518 SFLERLNLIFMSSSLQ--WSSTHTLDVAWRRKVTIEILNSLSATKLSKIILMQFGD 571


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 3   GNLLHWIQGLYQQRTRKARQYFGGRPE 29
           GN+  W Q L  +  R   + FGG PE
Sbjct: 219 GNMGLWDQALALRWLRDNAEAFGGDPE 245


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 3   GNLLHWIQGLYQQRTRKARQYFGGRPE 29
           GN+  W Q L  +  R   + FGG PE
Sbjct: 219 GNMGLWDQALALRWLRDNAEAFGGDPE 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,118
Number of Sequences: 429
Number of extensions: 4553
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 432
length of database: 140,377
effective HSP length: 60
effective length of query: 372
effective length of database: 114,637
effective search space: 42644964
effective search space used: 42644964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)