GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004265-TA|BGIBMGA004265-PA|IPR011057|Mss4-like,
IPR007515|Mss4
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.26 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   0.81 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.5  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   3.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   5.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   5.7  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              20   7.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   7.5  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 1   MAEMENDVSPIE-TEQREYVEDGKNKLVVQCKFCGSKILDKKSS--NYIAQEKDLP---- 53
           + E +  +  +E TE  E+ ED K K    C      ++DKK+    Y   +K +P    
Sbjct: 44  IGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLLKKVIPEAFK 103

Query: 54  -----LMQQASNNDREVQNETIKEFYHVENMYTFENIGF 87
                ++   SN D   + E  K F  ++ MY    I F
Sbjct: 104 EIGVEMIDSCSNVDSSDKCE--KSFMFMKCMYEVNPIAF 140


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 47  AQEKDLPLMQQASNNDREVQNETIKEFYHVENMY 80
           A+  ++      +++   + N TI+E Y + NMY
Sbjct: 562 AEPSNIEESNNMTDSFTRIANNTIQELYTLNNMY 595


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 83  ENIGFTHTVDNHKYLSCADCD 103
           +N  ++HT D +++ S  D D
Sbjct: 229 DNSDYSHTTDENRHSSTLDID 249


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 20  EDGKNKLVVQCKFCGSKILDKKSSNYI 46
           E+G NKL+ +C       L  KS+  +
Sbjct: 94  ENGVNKLITECSAISDADLAVKSAKLL 120


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
          protein.
          Length = 90

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 26 LVVQCKFCGSKILD 39
          +++Q  FCG  ++D
Sbjct: 22 VIIQLPFCGPNVID 35


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 19 VEDGKNKLVVQCKFCGSKILDKKS 42
          VED K +L  +C      ILDK +
Sbjct: 54 VEDKKVQLYCECILKNFNILDKNN 77


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 6   NDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYI 46
           N+V   E  +    E+  NKL+ +C       +  KSS  I
Sbjct: 80  NEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKLI 120


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 65  VQNETIKEFYHVENMYTFENIGFT 88
           V+ E + +  HV    TF+N  FT
Sbjct: 165 VREEILFDTVHVTFKLTFDNRAFT 188


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,710
Number of Sequences: 429
Number of extensions: 1655
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)