GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004264-TA|BGIBMGA004264-PA|undefined
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.36 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 15 IEEKTNSKNSDESSILYVNKKSIRNCRNCDTSHNINKYPAYSKECLKCKK 64
          +EEKT  +  +E + L     +        TS N   YP Y     K KK
Sbjct: 45 VEEKTQLRYLEELNALRTELGASTKLATDTTSENEENYPHYQMSGAKQKK 94


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 5   RDTRSLSCVDIEEKTNSKNSDESSILYV-NKKSIRNCRNCDT 45
           RDT +     ++E T +K  +ES  +++ N + IR+ +   T
Sbjct: 179 RDTMNKIAETLDEDTKNKLIEESKTVFILNNEIIRSIQGTGT 220


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 2   HLGRDTRSLSCVDIEEKTNSKNSDESSILYVNKKSIRNCRNCDTSHNINKYPAYSKECLK 61
           H  +DT  L+ ++IE   + + +D+    ++  +   +   C+     N    + ++  +
Sbjct: 67  HCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRR 126

Query: 62  CKKLN 66
            K L+
Sbjct: 127 KKSLD 131


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,649
Number of Sequences: 429
Number of extensions: 2310
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)