GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004261-TA|BGIBMGA004261-PA|undefined
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 21  LNIPENLYQYLTNIGN----TTTATGKEIKFNIPDVAI 54
           LN+P+   Q LT  GN    TT  T    +  IP  ++
Sbjct: 707 LNVPKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASL 744


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 14  QDSLPEDLNIPENLYQYLTNIGNTTTATGKEIKFNIPDVAIPGMSDDEV 62
           +++LP   ++P+  +Q +T+I   T  T  ++  ++    +   SD+E+
Sbjct: 70  EETLP---SLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNEL 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 73   DAQTHNAYECYIC 85
            D+     Y+CY+C
Sbjct: 1059 DSDRERLYDCYVC 1071


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 62  VGIPSDTFGIVDAQTHNA 79
           + IP DT  IVD+ T  A
Sbjct: 550 INIPGDTSIIVDSSTSGA 567


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,295
Number of Sequences: 429
Number of extensions: 2162
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)