GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004260-TA|BGIBMGA004260-PA|undefined
         (477 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   1.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   2.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   2.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   7.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   9.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 278 ENKSLFLNGVHIGKWKDKRYVLYISTEHDN 307
           + KSLF NGV IG   DK   + ++   DN
Sbjct: 161 DEKSLFENGVEIGINFDKYDNIQVNVSGDN 190


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 432 RSITEVVRKECKGCREKKNRVA 453
           R++ + +  EC  C EK+ ++A
Sbjct: 65  RNLPDALENECSPCSEKQKKIA 86


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 432 RSITEVVRKECKGCREKKNRVA 453
           R++ + +  EC  C EK+ ++A
Sbjct: 65  RNLPDALENECSPCSEKQKKIA 86


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 287 VHIGKWKDKRYVLYISTEHDNEMMETTNKRGTVIIKPSAILHYNNFMSGVDLQDQMLSYY 346
           +H+   K   ++  I   HD  +  TT K G V +   AI   N  +   D +   L  Y
Sbjct: 155 LHVFDLKTSNHLKQIEIPHDIAVNATTGKGGLVSLAVQAIDLANTLVYMADHKGDALIVY 214


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 242 DLAVKLLDRQTYCTGTLNKNRKGNPIELGTV 272
           +L +  +  Q Y +GTLN N     I+ G V
Sbjct: 373 ELWIFTISFQKYMSGTLNSNETNFRIQAGLV 403


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 385 NFYDFRLHILEKLLPKPEQITEKISTKHILTKIENVKTRLKKEGNT 430
           N Y     +++ L+ +P Q    + T  + ++  NVK + K +  T
Sbjct: 891 NLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTT 936


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 385 NFYDFRLHILEKLLPKPEQITEKISTKHILTKIENVKTRLKKEGNT 430
           N Y     +++ L+ +P Q    + T  + ++  NVK + K +  T
Sbjct: 887 NLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTT 932


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 308 EMMETTNKRGTVIIKPSAILHYNNFMSGVDLQDQMLSYYPSERKTM 353
           E+   TN R    ++  A  + N F   VD  + +L  YP  R+TM
Sbjct: 522 EICLLTNARRVASVR--AETYCNLFSLSVDHFNAVLDQYPLMRRTM 565


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 155 LSLDEAMVLWRGRLQ 169
           LS++E+ + W GRLQ
Sbjct: 388 LSVNESNITWPGRLQ 402


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 308 EMMETTNKRGTVIIKPSAILHYNNFMSGVDLQDQMLSYYPSERKTM 353
           E+   TN R    ++  A  + N F   VD  + +L  YP  R+TM
Sbjct: 490 EICLLTNARRVASVR--AETYCNLFSLSVDHFNAVLDQYPLMRRTM 533


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,509
Number of Sequences: 429
Number of extensions: 6644
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 477
length of database: 140,377
effective HSP length: 60
effective length of query: 417
effective length of database: 114,637
effective search space: 47803629
effective search space used: 47803629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)