GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004258-TA|BGIBMGA004258-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR004875|CENP-B protein,
IPR013103|Reverse transcriptase, RNA-dependent DNA polymerase
         (1409 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    26   2.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   4.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   7.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   7.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 1048 DEKPLPICNSEIPKTEVETREYPITITPNTN-LEREVTIPEQTHVHER 1094
            DE+ LP    E     +E  ++PIT+ P  N +E++ T    T   ER
Sbjct: 510  DERGLPFTFREQKNLMIELDKFPITLQPGKNTIEQKSTKSSVTIPFER 557



 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 896 LTDTPEKAAIEEQSNKKLAKIAEIEMKRKIKENRP 930
           +T  P K  IE++S K    I      R + ENRP
Sbjct: 533 ITLQPGKNTIEQKSTKSSVTIPFERTFRNLDENRP 567


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
            monooxygenase protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 1286 LNGKLEEEIYVQSPEGCNLT 1305
            +  KL EE Y  +P GC+LT
Sbjct: 352  VQNKLYEETYALAPAGCDLT 371


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 1096 TTTETISNEHDHVLEGEES---DQVLYENHDHEDEMTVPEEFYDAEPPPTD 1143
            TT+ TIS +H  V    +    +  + +N DH++ M +P +  D     +D
Sbjct: 393  TTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDENMIIPPKKSDMSNMQSD 443


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 1265 LLSVSAHENLHLVQFDVCTAFLNGKLEEEIYVQSPEGCNLTEGTSTV-FKLNRSLYGLKQ 1323
            +L +    +L L+  ++C   L  +L+E I +++   C L   T  + F  N  +     
Sbjct: 122  VLMIEQGASLSLITMELCGTTLQNRLDEAILIKNERICILKSITCALQFCHNAGIVHADV 181

Query: 1324 APKS 1327
             PK+
Sbjct: 182  KPKN 185


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 1326 KSDDDDEGKRNEAKKRRYQGDDGQSDSDCRY 1356
            K D+ DEGK ++ K  +++ D G       Y
Sbjct: 215  KEDEIDEGKESKTKLSQWRKDGGTVKKKVNY 245


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 833 SDCPLPSPLEEPVQSSSVS 851
           S CP+   LE+PV SSS +
Sbjct: 310 SQCPMLQKLEKPVLSSSTT 328


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,731
Number of Sequences: 429
Number of extensions: 19942
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 11
length of query: 1409
length of database: 140,377
effective HSP length: 66
effective length of query: 1343
effective length of database: 112,063
effective search space: 150500609
effective search space used: 150500609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)