GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004254-TA|BGIBMGA004254-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 15  SQNGDHDTEVLIDYR 29
           +QN DH    +IDYR
Sbjct: 418 AQNIDHAKNTIIDYR 432


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 1   MVNTRKQLREQERSSQNGDHDTEVLIDYR 29
           +++  K +R   +  +N D D EV+ D++
Sbjct: 447 VISALKGVRFIAQHIKNADKDNEVIEDWK 475


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 54  DVQMSHHQAEKWVEKHQTTFEEVPQMDQLNYSC 86
           +V +SH   + W EK +  +  VP +  + + C
Sbjct: 254 EVPLSHPTYD-WFEKLELKWFAVPAVSGMVFDC 285


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 74   EEVPQMDQLNYSCYHGN 90
            +EV + D   YSCY  N
Sbjct: 1334 KEVDRTDAGEYSCYVEN 1350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.123    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,409
Number of Sequences: 429
Number of extensions: 805
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)