GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004252-TA|BGIBMGA004252-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   8.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 10  GASPEAEIPRDNEVASPCD 28
           G  P  + P D E+  P D
Sbjct: 233 GFDPYVKTPNDEELEKPTD 251


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 12  SPEAEIPRDNEVASPCDNAELMAE 35
           SP  E P   E+    D+A  +A+
Sbjct: 501 SPTFEKPLVREIEKTIDDARFIAQ 524


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.302    0.120    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543
Number of Sequences: 429
Number of extensions: 548
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.3 bits)
S2: 35 (18.2 bits)