GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004249-TA|BGIBMGA004249-PA|IPR000873|AMP-dependent
synthetase and ligase
         (419 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.69 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.69 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 2   STIVICTQDYEKLLRPIALDLSRPLLVTGKDKEITAQLYQPNSAF 46
           S ++   +++EK+LR  A  ++   LV+ +DKE +A++     AF
Sbjct: 241 SRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAF 285


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 2   STIVICTQDYEKLLRPIALDLSRPLLVTGKDKEITAQLYQPNSAF 46
           S ++   +++EK+LR  A  ++   LV+ +DKE +A++     AF
Sbjct: 241 SRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAF 285


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 119 HIHGQLNSMLASLAAGARIRMLPSFVSHAVWARLLGMGERDDS 161
           H H Q    +A+ A GA   M+P F S A  +  L      D+
Sbjct: 98  HHHHQQQQAVAAAAFGATSSMVPGFGSTAASSAALAAAAAVDA 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,266
Number of Sequences: 429
Number of extensions: 4212
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 419
length of database: 140,377
effective HSP length: 59
effective length of query: 360
effective length of database: 115,066
effective search space: 41423760
effective search space used: 41423760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)