GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004248-TA|BGIBMGA004248-PA|undefined
         (92 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   7.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   7.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 60  TRVALQDEVGIYTYAGLYQAAAALST 85
           T+VA  D++   T+A L QAA   +T
Sbjct: 542 TQVAELDQIYADTHAKLVQAAFEQNT 567


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 72  TYAGLYQAAAALSTEI 87
           TY+GL++   A+S+ +
Sbjct: 99  TYSGLWRVCVAISSRM 114


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 2   LEARLLDELPAVTSYEDIM 20
           + ARL+D    + +YED +
Sbjct: 92  IAARLIDIFMGMRTYEDFL 110


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 6   LLDELPAVTSYEDIMLSNL 24
           +LDE P+V  +  ++L +L
Sbjct: 873 VLDEFPSVRPFAPLLLLHL 891


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,361
Number of Sequences: 429
Number of extensions: 617
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 92
length of database: 140,377
effective HSP length: 48
effective length of query: 44
effective length of database: 119,785
effective search space:  5270540
effective search space used:  5270540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)