GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004246-TA|BGIBMGA004246-PA|undefined
         (85 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   2.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   5.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 5   SSVGGDVESSSIISEREDVQARRDG 29
           ++V   V+SSSI+S  +  + +R G
Sbjct: 379 AAVAAAVQSSSIVSSPDSARHQRIG 403


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 9   GDVESSSIISEREDVQARRDG 29
           GDV S   + E   V+  RDG
Sbjct: 133 GDVGSIVYVMEEGKVEVSRDG 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075
Number of Sequences: 429
Number of extensions: 248
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 140,377
effective HSP length: 47
effective length of query: 38
effective length of database: 120,214
effective search space:  4568132
effective search space used:  4568132
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)