GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004245-TA|BGIBMGA004245-PA|undefined
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    29   0.048
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.45 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   9.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   9.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 29.5 bits (63), Expect = 0.048
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 265 ARQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQHY 310
           A+QQ+ ++ QQ Q  + A   Q+ Q + Q          QQQ+QH+
Sbjct: 420 AQQQHQQQQQQTQHVINAQQPQQQQ-QQQQQQQQQQQQQQQQQQHW 464



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 272 KIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQ 308
           K+ + Q+ +QA  Q + Q +    +++     QQQ+Q
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQ 446



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 274 QQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQ 308
           QQ Q   Q  HQQ+ Q ++Q  I +     QQQ+Q
Sbjct: 414 QQQQMQAQQQHQQQQQ-QTQHVINAQQPQQQQQQQ 447



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 266 RQQNLEKIQQ-LQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQ 308
           +QQ ++  QQ  Q+  Q  H   AQ   Q          QQQ+Q
Sbjct: 414 QQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQ 457


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 255  SVTQLDGLEAARQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSH 299
            + +++ GL+  +Q+N   +QQ Q+  Q   QQ+ Q + Q     H
Sbjct: 1191 ATSRIRGLQE-QQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQH 1234



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 266  RQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQH 309
            +QQ  ++ QQ Q+  Q   QQ+ Q + Q          QQQ+++
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEY 1550



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 273  IQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQH 309
            +Q+ Q       QQ+ Q + Q          QQQ+QH
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQH 1234



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 274  QQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQ 308
            QQ Q+  Q   QQ+ Q +SQ          QQQ+Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQ 1537



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 266  RQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQ 308
            + Q  +  QQ Q+  Q   QQ++Q   Q          QQQ+Q
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQ 1541


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/20 (35%), Positives = 16/20 (80%)

Query: 259 LDGLEAARQQNLEKIQQLQE 278
           +  L+++R+Q  EK++Q++E
Sbjct: 378 IQSLDSSRRQYREKVKQVEE 397


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/20 (35%), Positives = 16/20 (80%)

Query: 259 LDGLEAARQQNLEKIQQLQE 278
           +  L+++R+Q  EK++Q++E
Sbjct: 346 IQSLDSSRRQYREKVKQVEE 365


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,904
Number of Sequences: 429
Number of extensions: 2767
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 15
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)