GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004244-TA|BGIBMGA004244-PA|undefined
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34  NYLIPTLEYFHGGALEEGSGTGSVY 58
           N L+P L + +GG    G+ T  VY
Sbjct: 155 NGLLPLLVWIYGGGFMSGTATLDVY 179


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34  NYLIPTLEYFHGGALEEGSGTGSVY 58
           N L+P L + +GG    G+ T  VY
Sbjct: 155 NGLLPLLVWIYGGGFMSGTATLDVY 179


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 37  IPTLEYFHGGALEEGSG 53
           +P + + HGGA + GSG
Sbjct: 122 LPVIFWIHGGAFQFGSG 138


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 37  IPTLEYFHGGALEEGSG 53
           +P + + HGGA + GSG
Sbjct: 122 LPVIFWIHGGAFQFGSG 138


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 59  AIVTYKAADCHPGV 72
           AI T   ADC PGV
Sbjct: 643 AICTKLTADCQPGV 656


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 47  ALEEGSGTGSVYAIVTYKAADC 68
           ALEE   TG V A ++ +   C
Sbjct: 161 ALEEQFATGRVLACISSRPGQC 182


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 143 GGIVPPGVPATIEQAARMLSER 164
           G ++PPGV  T +   + LS +
Sbjct: 363 GNLLPPGVCYTCDVCGKTLSTK 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,727
Number of Sequences: 429
Number of extensions: 2296
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)