GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004243-TA|BGIBMGA004243-PA|IPR013057|Amino acid
transporter, transmembrane
         (367 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    29   0.048
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    29   0.048
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    29   0.048
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    29   0.063
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.19 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   9.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 0.048
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 325 IAATVIATYCSWAHSIEYAEFSPPCLLNATIAARSFLESQMA 366
           I  TV+++Y      +   +F  PC+++  +  R++LES++A
Sbjct: 321 IKRTVVSSYLQLQDLL--GDFEHPCVMDCKVGVRTYLESELA 360


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 29.5 bits (63), Expect = 0.048
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 325 IAATVIATYCSWAHSIEYAEFSPPCLLNATIAARSFLESQMA 366
           I  TV+++Y      +   +F  PC+++  +  R++LES++A
Sbjct: 236 IKRTVVSSYLQLQDLL--GDFEHPCVMDCKVGVRTYLESELA 275


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 0.048
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 325 IAATVIATYCSWAHSIEYAEFSPPCLLNATIAARSFLESQMA 366
           I  TV+++Y      +   +F  PC+++  +  R++LES++A
Sbjct: 555 IKRTVVSSYLQLQDLL--GDFEHPCVMDCKVGVRTYLESELA 594


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 0.063
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 61  HAPDFLIAYGILAFQFDIHPMLLTIQVDMRDSKKVNKAVLGGFA-ITGFMFTTTAFLVAT 119
           H    +  Y     QF    + +TI VD+RD++   K      A +TGF      F  + 
Sbjct: 158 HDNKLITMYRFPQNQFKESSLFVTIAVDVRDTEDKCKDTFAYIADVTGFALLVYDFRNSR 217

Query: 120 RYGQDVTNNILQTIPP 135
            +   +TNN+    PP
Sbjct: 218 SW--RITNNLFYPYPP 231


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 239 SQNAYSNNATNGSLDSQKSKLNKIETSGSSQQNG 272
           +QNA + NA N + D+Q +     +   +++QNG
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNANKQNG 457



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 238 ESQNAYSNNATNGSLDSQKSKLNKIETSGSSQQN 271
           ++QNA + NA N + D+Q +          ++QN
Sbjct: 433 DNQNADNQNANNQNADNQNANKQNGNRQNDNRQN 466



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 238 ESQNAYSNNATNGSLDSQKSKLNKIETSGSSQQNG 272
           ++QNA + NA N + + Q            ++QNG
Sbjct: 438 DNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNG 472


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 244 SNNATNGSLDSQKSKLNKIETSGSSQQNGVVTVIQNGENVNPSLY 288
           S   +    + ++SK  KI +S S+     ++   N  N N  LY
Sbjct: 301 SKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKLY 345


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 244 SNNATNGSLDSQKSKLNKIETSGSSQQNGVVTVIQNGENVNPSLY 288
           S   +    + ++SK  KI +S S+     ++   N  N N  LY
Sbjct: 63  SKERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLY 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,433
Number of Sequences: 429
Number of extensions: 3556
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 367
length of database: 140,377
effective HSP length: 59
effective length of query: 308
effective length of database: 115,066
effective search space: 35440328
effective search space used: 35440328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)