GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004242-TA|BGIBMGA004242-PA|undefined
         (149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 37 SVLFTILCIVDL 48
          S++FTILCI+ L
Sbjct: 30 SLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 37 SVLFTILCIVDL 48
          S++FTILCI+ L
Sbjct: 30 SLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
          channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 37 SVLFTILCIVDL 48
          S++FTILCI+ L
Sbjct: 30 SLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 37 SVLFTILCIVDL 48
          S++FTILCI+ L
Sbjct: 30 SLIFTILCILTL 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.142    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,161
Number of Sequences: 429
Number of extensions: 1410
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 140,377
effective HSP length: 53
effective length of query: 96
effective length of database: 117,640
effective search space: 11293440
effective search space used: 11293440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)