GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004239-TA|BGIBMGA004239-PA|undefined
         (198 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.091
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 0.091
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 54  QWRSLPNAQILKKV----RKVQHVLETASFEPSKEIKLAKKTAKGHVL 97
           QWR      + KKV    R V  VLE    +P+K+++++ + +K  V+
Sbjct: 231 QWRK-DGGTVKKKVNYVYRSVDQVLEDGKLKPNKKVRISNEMSKVKVI 277


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 175 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 204


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 175 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 204


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 175 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 204


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 180 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 209


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 175 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 204


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 141 EKEGVKEDLQSANLIKELDSLEIRSLRPMG 170
           E+E +K  L   N IKE D++ + ++   G
Sbjct: 175 EREEIKNVLTKINKIKEHDTVLVVNIEKSG 204


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 137 DSSVEKEGVKEDLQSANLIKELDSLEIRSLRPM 169
           DSS   EG +       L +E   L ++ LRP+
Sbjct: 338 DSSSSVEGWENRATIPELNEEFRDLRLQDLRPL 370


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,963
Number of Sequences: 429
Number of extensions: 1811
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 140,377
effective HSP length: 55
effective length of query: 143
effective length of database: 116,782
effective search space: 16699826
effective search space used: 16699826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)