GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004238-TA|BGIBMGA004238-PA|IPR005312|Protein of unknown
function DUF1759
         (597 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.76 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   3.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   9.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   9.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 404 FVVHQFSSARQSLDNQASGMNQEIELILGTDILNYVFDGTKI 445
           + +HQF++ +  L+ +++ ++QE++ +L T  +N   DG +I
Sbjct: 182 YYLHQFATGQPDLNYRSAALDQEMKNVL-TFWMNRGVDGFRI 222


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 206 PFRLRQTFEERYGKAQDGLPTFEQLMQLLDEQCRLQSTVSGQSPHRGS 253
           P  + Q   + + K +   PTF  L Q LD+  R   T+   + +RG+
Sbjct: 864 PEAIYQLMLDCWQKERTHRPTFANLTQTLDKLIRSPDTLRKIAQNRGT 911


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 429 LILGTDILNYVFDGTKISLPSGAAAYVTCF 458
           +++   I +Y F+ TKI++P     ++  F
Sbjct: 372 ILMRKAISDYTFNDTKITIPKEMKIWIPAF 401


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 486 NGKIPTSVQYYGVQVTRLEEAVQRFWKSEEPPME--KVEHPDHKECEELYQTTTPSDDPG 543
           N  +PTS  Y G      +       KS+   ME   + HP+ K   +++ TT+ S   G
Sbjct: 364 NVTLPTST-YSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAAG 422

Query: 544 G 544
           G
Sbjct: 423 G 423


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,687
Number of Sequences: 429
Number of extensions: 6696
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 4
length of query: 597
length of database: 140,377
effective HSP length: 62
effective length of query: 535
effective length of database: 113,779
effective search space: 60871765
effective search space used: 60871765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)