GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004237-TA|BGIBMGA004237-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   0.092
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   1.5  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    24   3.4  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    23   4.6  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    23   6.0  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    23   8.0  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.1 bits (62), Expect = 0.092
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 39  APQQK-QGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQDIEDK 81
           APQ + Q  K R  ++ K + +R+D  R+   + K+A+Q IE++
Sbjct: 504 APQSREQIQKQRQKAKTKLENQRRDKERQEELRRKEAMQKIEEQ 547


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 49  RP-PSQRKRDQR-RQDIFRENNPKTKQALQDIEDKIS 83
           RP PS+RKR  R ++   +E +PK+++  +D  DK S
Sbjct: 138 RPEPSKRKRTARPKKPEAKEPSPKSRKTDEDKHDKDS 174


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 43  KQGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQDIED 80
           K+G K +   + + D   Q+I     PK   A+ +++D
Sbjct: 105 KKGKKGKKSKKVEEDDEPQEIESPQGPKELTAVTELDD 142



 Score = 23.4 bits (48), Expect = 4.6
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 41 QQKQGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQDIED 80
          ++K+G K++    +  D   Q++     PK   A+ +++D
Sbjct: 58 KKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELDD 97


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 54  RKRDQRRQDIFRENNPKTKQALQDIEDKISL 84
           RK       I +E  P    AL+DI+D +S+
Sbjct: 109 RKPTYSLDHIIKERYPTFHDALKDIDDALSM 139


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)

Query: 63  IFRENNPKTKQALQDIEDKISLRE 86
           I +++N +T QA++ ++D+  LR+
Sbjct: 77  ILQKSNDETAQAMRKMQDQARLRD 100


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 41  QQKQGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQD 77
           QQ+Q  + +   Q+++ Q++Q   ++   + KQA Q+
Sbjct: 259 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQN 295


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,317
Number of Sequences: 5004
Number of extensions: 7792
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)