GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004237-TA|BGIBMGA004237-PA|undefined
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.17 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   3.8  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              19   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.17
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 40  PQQKQGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQ-DIEDKIS 83
           PQQ+Q  + + P Q+++ Q++Q   ++  P T      +IE++ S
Sbjct: 830 PQQQQQQQQQQPQQQQQQQQQQQ-QQQRGPMTNDDFNPNIEEEAS 873


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 44  QGPKSRPPSQRKRDQRRQDIFRENNPKTKQALQDIEDKIS 83
           +GPK   P      +R   I R + PK K    +I DK S
Sbjct: 431 RGPKQNKPKVLHAIRRGASILRVSMPKIKDV--NIIDKYS 468


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 46  PKSRPPSQRKRDQRRQ 61
           P+  PPS+++  +RR+
Sbjct: 396 PRQTPPSRKESGRRRR 411


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 40  PQQKQGPKSRPPSQRKRDQRRQ 61
           PQQ+Q  + +   Q+++ Q++Q
Sbjct: 440 PQQQQQQQQQQQQQQQQQQQQQ 461


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 57 DQRRQDIFRENN 68
          DQ+++D FR+ N
Sbjct: 40 DQQKEDDFRDGN 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,510
Number of Sequences: 429
Number of extensions: 674
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)