GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004235-TA|BGIBMGA004235-PA|undefined
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 2   SMIVSNACKERWTRIRDNHRKALNLRKTK 30
           S I  N  ++ W  +  +++  LNL + K
Sbjct: 427 SKIAENLLEKNWLPVHTSYKSGLNLEQEK 455


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 80  LSDSSNLHNNELLKHQVHYPSNPRHQH 106
           L  S + H +   ++  H  S+P HQH
Sbjct: 312 LPPSYHPHQHHPSQYHPHRGSSPHHQH 338


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 70  NNNDESQLEALSDSSNLHNN 89
           NN    Q    S S+N HNN
Sbjct: 443 NNQHNDQAHHSSKSNNRHNN 462


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.126    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,533
Number of Sequences: 429
Number of extensions: 1374
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)