GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004233-TA|BGIBMGA004233-PA|undefined
         (360 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   9.4  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   9.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 101 PPGLTPMSSCIWHMLWPRHHGT 122
           PP  T + + I H+  P HH T
Sbjct: 300 PPSATLVGTTITHLRDPDHHST 321


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 56  VIITNKAESDEPEFAAELEAIQTQFSESLVDGQSANIIRIRETLLPP 102
           VI++NK        A EL+ I+ +    L    +   + ++  ++ P
Sbjct: 100 VILSNKGPEGIQINATELQKIKLEIHRDLPGKSTTTTVEVKRDIINP 146


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 188 EELHQATTKNKVVVVMSTMHHDNSIDESTGEKQKPEMITFYNSTKAGVDVVDEL 241
           EE  + T   + V  + T+  +  I    GEKQ      F ++    +  VD++
Sbjct: 69  EEFEEETVDGRKVKSVCTLDGNKLIQVQKGEKQTTIEREFSSTEMKAIMKVDDI 122


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,361
Number of Sequences: 429
Number of extensions: 4383
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 360
length of database: 140,377
effective HSP length: 59
effective length of query: 301
effective length of database: 115,066
effective search space: 34634866
effective search space used: 34634866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)