GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004230-TA|BGIBMGA004230-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   2.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   8.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 47  QKGLQKTRCVRECISPSCY 65
           QKGL    C   C++P  Y
Sbjct: 298 QKGLFLFACTNSCMNPIVY 316


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 22  KDSPKNEITYKEFETACEQSSACSYQKGLQKTRCVRECISPSC 64
           ++S KNE  Y+++    ++ S    ++   K   +   +S SC
Sbjct: 269 QNSYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNSC 311


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 24  SPKNEITYKEFETACEQSSACSY 46
           +P N+  YK+ +   ++SS+ S+
Sbjct: 936 TPVNKKVYKQNDYIVDESSSSSF 958


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,327
Number of Sequences: 429
Number of extensions: 1333
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)