GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004228-TA|BGIBMGA004228-PA|IPR003577|Ras small GTPase,
Ras type, IPR013684|Miro-like
         (217 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 142 GPDDPNSLENTCSKASNWCAREKVRHFEVNAMDRPSLYEPFIF 184
           G DDP+SL     K +N      +RH +  A    ++   + F
Sbjct: 326 GADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNF 368


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 148 SLENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           S E +CS+  N   REK R +E    ++  L E
Sbjct: 232 SRERSCSRDRNREYREKDRRYEKLHNEKEKLLE 264


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKNRRYEKLHNEKEKLLE 31


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKDRRYEKLHNEKEKLLE 31


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKDRRYEKLHNEKEKLLE 31


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKDRRYEKLHNEKEKLLE 31


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CS+  N   REK R +E    ++  L E
Sbjct: 1   ERSCSRDRNREYREKDRRYEKLHNEKEKLLE 31


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 150 ENTCSKASNWCAREKVRHFEVNAMDRPSLYE 180
           E +CSK  N   +EK R +E    ++  L E
Sbjct: 1   ERSCSKDRNREYKEKDRRYEKLYNEKEKLLE 31


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,467
Number of Sequences: 429
Number of extensions: 3055
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 14
length of query: 217
length of database: 140,377
effective HSP length: 55
effective length of query: 162
effective length of database: 116,782
effective search space: 18918684
effective search space used: 18918684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)