GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004227-TA|BGIBMGA004227-PA|IPR006085|XPG N-terminal,
IPR006086|XPG I, IPR008918|Helix-hairpin-helix motif, class 2
         (380 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   10.0 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   10.0 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   10.0 

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 247 IDLIRQHRTL-DEVLKNIDTEKYQPPTDWD 275
           IDL   ++ + D+V   ID  +Y P  +WD
Sbjct: 173 IDLKHINQNMGDKVEIGIDLREYYPSVEWD 202


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 307 VKFLCGDRQFNEERVRNGAKKL 328
           V F+  D  FNEE+ R    KL
Sbjct: 70  VGFVNADTTFNEEKFRERTTKL 91


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 146 KLMGVPVVDAPCEAEAQCAALVKSGKVFAAATE 178
           K M V  +  PC   A+C A +    +  AA E
Sbjct: 468 KYMAVSGLPEPCRCHARCIARLALDMMDLAADE 500


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 146 KLMGVPVVDAPCEAEAQCAALVKSGKVFAAATE 178
           K M V  +  PC   A+C A +    +  AA E
Sbjct: 468 KYMAVSGLPEPCRCHARCIARLALDMMDLAADE 500


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,736
Number of Sequences: 429
Number of extensions: 3728
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 380
length of database: 140,377
effective HSP length: 59
effective length of query: 321
effective length of database: 115,066
effective search space: 36936186
effective search space used: 36936186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)