GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004220-TA|BGIBMGA004220-PA|undefined
         (474 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   7.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 236 LVAIQVCISLTVAAPGCPRG 255
           LVA+ +C + T+AAP  P G
Sbjct: 2   LVAVVLCTTATLAAPQRPSG 21


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 180 WTDVRLPGVLQRLAAMYLIVGALECALMRTTQNI 213
           WTD+ L G+   L  + ++   L  A + TT+ +
Sbjct: 35  WTDLVLAGLFTMLIIVTIVGNTLVIAAVITTRRL 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,569
Number of Sequences: 429
Number of extensions: 4671
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 474
length of database: 140,377
effective HSP length: 60
effective length of query: 414
effective length of database: 114,637
effective search space: 47459718
effective search space used: 47459718
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)