GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004212-TA|BGIBMGA004212-PA|undefined
         (430 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   1.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 55  KLLSIEYIKSHSYYTSNQYTIFKDKYEHIRAVITNY 90
           KLL   +     Y+    YTI K+K+  +  +I NY
Sbjct: 358 KLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNY 393


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 55  KLLSIEYIKSHSYYTSNQYTIFKDKYEHIRAVITNY 90
           KLL   +     Y+    YTI K+K+  +  +I NY
Sbjct: 358 KLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNY 393


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 1   MEDILYTQQQLLEAIEQLYTNFKKDSSDRKTSDYLRRRLETLNQYWQEFQ---FNHKKLL 57
           +E+    + QLLE+ ++    +  +    K  +YL+R  +TL     E      N  K L
Sbjct: 288 LEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFL 347

Query: 58  SIEYIKS 64
             +Y+K+
Sbjct: 348 KQKYVKN 354


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 379 INHIINVSVPELEFNITDHQGSFRHIKGQIEEMKSEK 415
           + H +N+ V   E +I  +    RH+  ++  +++EK
Sbjct: 319 LQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEK 355


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,567
Number of Sequences: 429
Number of extensions: 4762
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 430
length of database: 140,377
effective HSP length: 60
effective length of query: 370
effective length of database: 114,637
effective search space: 42415690
effective search space used: 42415690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)