GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004210-TA|BGIBMGA004210-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.82 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.82
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 334  YSAQHDILVTSGESGILSVWGDCQSEPEAPE 364
            YS Q  +  TSG  G+ S    CQ+E +APE
Sbjct: 1152 YSMQV-LAFTSGGDGVKSAPIHCQTEQDAPE 1181


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 45  RLDGTKSLNLAISLSDNSIEIYKLSDSS 72
           +LD T+  +L ISLS+N      +SDS+
Sbjct: 525 QLDSTELADLDISLSENLSSGLSISDST 552


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 312 VDKKLQPCSNFKDNKQVVRSCWYSAQHDILVTSGESGILSVWGDCQSEPEAPEVRKLTDS 371
           VD+ L+     K NK+V  S   S    I +T  E  ILS +       + P+   +TD 
Sbjct: 250 VDQVLED-GKLKPNKKVRISNEMSKVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVTDK 308

Query: 372 LSKL 375
            SK+
Sbjct: 309 KSKV 312


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,261
Number of Sequences: 429
Number of extensions: 4832
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 383
length of database: 140,377
effective HSP length: 59
effective length of query: 324
effective length of database: 115,066
effective search space: 37281384
effective search space used: 37281384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)