GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004209-TA|BGIBMGA004209-PA|undefined
         (411 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.89 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.3  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 146 LSRREISVIINDIWLGKQQHMSMSMQDYVTKY 177
           L R E   +  + +LGK+   +++++D VTKY
Sbjct: 76  LRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKY 107


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 170 MQDYVTKYFEDRYQ 183
           M+  +T+YFE RYQ
Sbjct: 408 MRQRITEYFEHRYQ 421


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 170 MQDYVTKYFEDRYQ 183
           M+  +T+YFE RYQ
Sbjct: 376 MRQRITEYFEHRYQ 389


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 223 VYWGLRTHWRALRDQLYRH 241
           V+WG    W   R Q Y H
Sbjct: 167 VFWGSAWQWNEERKQYYLH 185


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)

Query: 196 CAGAEQ---LLDDPQVRLFWG 213
           C G +Q   LL+ PQ+ L WG
Sbjct: 168 CTGYQQYLRLLEVPQINLEWG 188


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,191
Number of Sequences: 429
Number of extensions: 4306
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 140,377
effective HSP length: 59
effective length of query: 352
effective length of database: 115,066
effective search space: 40503232
effective search space used: 40503232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)