GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004208-TA|BGIBMGA004208-PA|IPR003726|Homocysteine
S-methyltransferase
         (325 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.89 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.89 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.89 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.3  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 178 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 237
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 238 P 238
           P
Sbjct: 419 P 419


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 178 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 237
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 238 P 238
           P
Sbjct: 419 P 419


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 178 KEAEALVEILKEYPNMKAWLSFSCKNETSLAHGENFQNVAKKCWKSNPDQLIAIGVNCCS 237
           KEA   V I   Y N +  L  S K +  + +  NF +V  +   +N ++LI +   C +
Sbjct: 360 KEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI-LNTRCEN 418

Query: 238 P 238
           P
Sbjct: 419 P 419


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
          isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 74 GFVKHLNLTVEESYELIKS 92
          G   H++LT++  YEL+++
Sbjct: 67 GQTNHISLTLDLEYELVEN 85


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 74  GFVKHLNLTVEESYELIKS 92
           G   H++LT++  YEL+++
Sbjct: 105 GQTNHISLTLDLEYELVEN 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,598
Number of Sequences: 429
Number of extensions: 4243
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 325
length of database: 140,377
effective HSP length: 58
effective length of query: 267
effective length of database: 115,495
effective search space: 30837165
effective search space used: 30837165
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)