GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004203-TA|BGIBMGA004203-PA|undefined
         (59 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   0.88 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    18   8.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    18   8.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 0.88
 Identities = 6/18 (33%), Positives = 15/18 (83%)

Query: 1  MPNAKYLKVTVVDQGSNP 18
          MP++++ K++ VD+ ++P
Sbjct: 1  MPSSEFSKISKVDRSTSP 18


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 27  SRITKITVTTFHQVLFWDTFI 47
           SRI    V  F  + +W T++
Sbjct: 419 SRIFFPIVFAFFNLAYWSTYL 439


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 27  SRITKITVTTFHQVLFWDTFI 47
           SRI    V  F  + +W T++
Sbjct: 419 SRIFFPIVFAFFNLAYWSTYL 439


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003
Number of Sequences: 429
Number of extensions: 413
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 140,377
effective HSP length: 39
effective length of query: 20
effective length of database: 123,646
effective search space:  2472920
effective search space used:  2472920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)