GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004202-TA|BGIBMGA004202-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (309 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.64 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 205  LASVPSDKSTACNGKVFIYEYSETSRR 231
            L +VP+DK +AC+ K+ +   S+ +++
Sbjct: 1476 LYAVPTDKKSACDSKLIVDHSSQKTQQ 1502


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 54  GWRMTASWKA 63
           GW +T SWKA
Sbjct: 97  GWAITVSWKA 106


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,949
Number of Sequences: 429
Number of extensions: 4203
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 309
length of database: 140,377
effective HSP length: 58
effective length of query: 251
effective length of database: 115,495
effective search space: 28989245
effective search space used: 28989245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)