GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004201-TA|BGIBMGA004201-PA|IPR001680|WD-40 repeat,
IPR011048|Cytochrome cd1-nitrite reductase-like, C-terminal haem d1
         (535 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 245  YTLTSLAVNTENQVGFGTKNGVVLIYDLRDL-TIP 278
            YT  +L V   NQVG G  +  +L   + D+ +IP
Sbjct: 1080 YTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 245  YTLTSLAVNTENQVGFGTKNGVVLIYDLRDL-TIP 278
            YT  +L V   NQVG G  +  +L   + D+ +IP
Sbjct: 1076 YTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,683
Number of Sequences: 429
Number of extensions: 6273
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 2
length of query: 535
length of database: 140,377
effective HSP length: 61
effective length of query: 474
effective length of database: 114,208
effective search space: 54134592
effective search space used: 54134592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)