GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004183-TA|BGIBMGA004183-PA|undefined
         (471 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   2.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   3.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   3.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   7.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 386 LAVSSFLDTFVPSPAVACNLTLSLWA----FCQ 414
           LA+S+FL  F  SP +  N     W     FCQ
Sbjct: 94  LAISNFLMMFCMSPPMVINCYYETWVLGPLFCQ 126


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 161 DNRDFVKLLRYALYEEIPEPKEDVPPEKQIPP-IPAFERYATISKTAREVRRDRYE 215
           DNR+  +   +A  E+  E +   P E+ IPP +P  E+    +     +  D+Y+
Sbjct: 125 DNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINFDKYD 180


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 386 LAVSSFLDTFVPSPAVACNLTLSLWA----FCQ 414
           LA+S FL  F  SP +  N     W     FCQ
Sbjct: 60  LAISDFLMMFCMSPPMVINCYYETWVLGPLFCQ 92


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 197 ERYATISKTAREVRRDRYEAKMQKLREEKADRDR 230
           ++YAT S + R    D      +  RE +  RDR
Sbjct: 208 KKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDR 241


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 30  RKKQEITELLPEESAKIQEDLRLEEEYKEATER 62
           RKK    E L  E  K+ E+    E Y  + ER
Sbjct: 246 RKKDRRYEKLHNEKEKLLEERTSRERYSRSRER 278


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 33  QEITELLPEESAKIQEDLRLE 53
           Q+ T+ +PE S+ +QE  +++
Sbjct: 393 QQFTQYIPESSSNLQEKTKID 413


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 114 AAKETFKLTEAGVKEALYMSDVDPN 138
           ++K  +++ +A VKEA+  +  DPN
Sbjct: 514 SSKINYRIFKANVKEAVKDTXCDPN 538


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 185  PPEKQIPPIPAFERYATISKTAR 207
            PP +++PP+P    Y T  +  R
Sbjct: 1648 PPNRKLPPVPG-SNYNTCDRIKR 1669


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 197 ERYATISKTAREVRRDRYEAKMQKLREEKADRDR 230
           ++YAT S + R    D      +  RE    RDR
Sbjct: 208 KKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDR 241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,056
Number of Sequences: 429
Number of extensions: 4685
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 471
length of database: 140,377
effective HSP length: 60
effective length of query: 411
effective length of database: 114,637
effective search space: 47115807
effective search space used: 47115807
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)