GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004176-TA|BGIBMGA004176-PA|IPR000648|Oxysterol-binding
protein
         (981 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.43 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.56 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    26   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 15/38 (39%), Positives = 17/38 (44%)

Query: 278  TAPQPAIAFPNQPLQQTHPALERSASPKPQFVESVTRP 315
            T PQPA A   Q   Q  P  + +  PKP      TRP
Sbjct: 998  TPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRP 1035


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 328 KSESSHAQSRIQFQPQYFPTEQQLPRQSPSASTFRSQSHIPRNPFGASSSLIPNP 382
           + + S A S+ Q QP   P +QQ  +Q     T          P GA+S+ +P+P
Sbjct: 206 QQQQSQAASQ-QSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPSP 259


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 613 LDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHI 650
           LD++ P+     F AG A+Q    E  P V  P G ++
Sbjct: 19  LDTVVPNS-GELFKAGSAEQPKEQEPLPPVTPPQGENM 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 580 EVPDDLRQQLLSSGIL 595
           E+PDDLRQ++L  G L
Sbjct: 558 ELPDDLRQKVLPDGTL 573


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 580 EVPDDLRQQLLSSGIL 595
           E+PDDLRQ++L  G L
Sbjct: 558 ELPDDLRQKVLPDGTL 573


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 332 SHAQSRIQFQPQYFPTEQQLPRQSPSASTFRSQSH 366
           S AQS +Q   Q+FP  Q     S    T R   H
Sbjct: 905 SSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGH 939


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 267 RRDGQTEDHEETAPQPAIAFPNQPLQQTHPALERSASPKPQFVESVTRPNAYLPN-PSVP 325
           +RDG  E  E   P P       P     P      +    F+E+   PN  LP+ PS  
Sbjct: 626 KRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDSFIEA---PNKTLPSLPSTL 682

Query: 326 TFKSE 330
           T  S+
Sbjct: 683 TKNSK 687


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 340  FQPQYFPTEQQLPRQSPSASTFRSQSHIPRNPFGASSSLIPNPGFANGPTGPIFERPTAS 399
            F P+Y       P +    S +  Q   P + +G+  S+           G     P + 
Sbjct: 1803 FSPEYDDPANCAPEEDQYGSQY-GQYGAPYDHYGSRGSV------GRRSVGSARNIPVSG 1855

Query: 400  SPVSPAFPPTHHRAN 414
            SP  P  PP +H  N
Sbjct: 1856 SPEPPPPPPRNHDQN 1870


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,293
Number of Sequences: 429
Number of extensions: 15673
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 13
length of query: 981
length of database: 140,377
effective HSP length: 64
effective length of query: 917
effective length of database: 112,921
effective search space: 103548557
effective search space used: 103548557
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)