GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004175-TA|BGIBMGA004175-PA|IPR013906|Translation
initiation factor eIF3 subunit
         (241 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 221 NAHLNQYESYGNFDDDYDD 239
           N + N Y +Y N++++Y++
Sbjct: 328 NNYNNNYNNYNNYNNNYNN 346


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 89  EEMTPEQKLAEKLRQQKLQEESD 111
           E + PE + A K +++K Q+E D
Sbjct: 255 ECVVPEYQCAVKRKEEKAQKEKD 277


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query: 93  PEQKLAEKLRQQKLQEESDLR 113
           PE K+  + + ++L+EE+++R
Sbjct: 402 PEVKVTPRFQAKRLKEEANIR 422


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 89   EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKL 129
            +   P+Q+  +  +QQ+ Q++   +   + +G   G + +L
Sbjct: 1520 QSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQL 1560


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,107
Number of Sequences: 429
Number of extensions: 1457
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 140,377
effective HSP length: 56
effective length of query: 185
effective length of database: 116,353
effective search space: 21525305
effective search space used: 21525305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)