GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004166-TA|BGIBMGA004166-PA|IPR011769|Adenylate/cytidine
kinase, N-terminal, IPR000850|Adenylate kinase, IPR006266|UMP-CMP
kinase
         (194 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 109 LLFVLFFEC 117
           LLF++FFEC
Sbjct: 455 LLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 109 LLFVLFFEC 117
           LLF++FFEC
Sbjct: 508 LLFLMFFEC 516


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 11  APGSGKGTQCSMIS 24
           +P + KG++CSMI+
Sbjct: 275 SPATPKGSKCSMIT 288


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,409
Number of Sequences: 429
Number of extensions: 3082
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 194
length of database: 140,377
effective HSP length: 54
effective length of query: 140
effective length of database: 117,211
effective search space: 16409540
effective search space used: 16409540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)