GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004165-TA|BGIBMGA004165-PA|IPR000795|Protein synthesis
factor, GTP-binding, IPR004161|Elongation factor Tu, domain 2,
IPR005517|Elongation factor G, domain IV, IPR000640|Elongation factor
G, C-terminal, IPR009000|Translation factor, IPR009022|Elongation
factor G, III and V
         (832 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    35   0.002
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    35   0.003
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    31   0.039
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.36 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   4.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   4.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 1   MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 60
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 61  TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 118
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 1   MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 60
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 61  TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 118
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETAK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.039
 Identities = 17/68 (25%), Positives = 29/68 (42%)

Query: 87  EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 146
           E G  +  +D+PGH  F S       +TD  +           QT   +  A   ++  I
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPII 249

Query: 147 LFMNKMDR 154
           + +NK+D+
Sbjct: 250 VAINKIDK 257



 Score = 29.5 bits (63), Expect = 0.12
 Identities = 10/18 (55%), Positives = 16/18 (88%)

Query: 10  MSVIAHVDHGKSTLTDSL 27
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165



 Score = 26.6 bits (56), Expect = 0.83
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 255 KDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 295
           KD+ NK+   +   + +YK+ D I    K+EI D+L ++ V
Sbjct: 546 KDEANKKGVSLRFYNVVYKLIDNI----KKEIYDILPEVDV 582


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 627 GPEGTGPNILVDCSKGVQYLNEIKDSVVA 655
           GP   GP+ ++D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 9  NMSVIAHVDHGKSTLTDSL 27
          N+  I HV HGKST+  ++
Sbjct: 44 NIGTIGHVAHGKSTIVKAI 62


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 90  FLINLIDSPGHVDFSSEVTAALRVTDGAL 118
           + + +ID+PGH DF   +       D A+
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAV 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 90  FLINLIDSPGHVDFSSEVTAALRVTDGAL 118
           + + +ID+PGH DF   +       D A+
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAV 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,746
Number of Sequences: 429
Number of extensions: 10705
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 12
length of query: 832
length of database: 140,377
effective HSP length: 63
effective length of query: 769
effective length of database: 113,350
effective search space: 87166150
effective search space used: 87166150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)