GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004161-TA|BGIBMGA004161-PA|undefined
         (291 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.8  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.4  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 219 PDTDRERPANRKPEPQKSVIISNN 242
           P+T   R  N+KP P + V   NN
Sbjct: 23  PETTPRRKKNKKPLPTECVFCRNN 46


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 9   IQQAVNTVRDLTHIDQTVPYITSVLEQPISIFTKNEVLDNSPIASAEECFELPPIRILPN 68
           I Q  N + D ++I      + + LE+ + +      ++   I+  E   ++ P  + PN
Sbjct: 429 IFQIANELEDASNIP-----VHATLEKFMILCNLMRTMNRKQISELESNMQISPNELKPN 483

Query: 69  DISENVLESIVGEYRD 84
           D S+ + ++    +RD
Sbjct: 484 DKSQVIKQNTWTVFRD 499


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 247 PKIVELPNTWNLENIELKLDLNSSNSFGDGL 277
           P+I  +PNT  L+  E+ L    +  F D +
Sbjct: 92  PRITSVPNTSRLDKSEISLATKQACGFIDNI 122


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 234 QKSVIISNNTDLVPKIVELPNTWNLENIELKL 265
           +KS II N+   + K+VE+ N  N+ +I++K+
Sbjct: 84  EKSHIIQNDEIQLDKLVEMANRKNI-SIDVKM 114


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,256
Number of Sequences: 429
Number of extensions: 4689
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 291
length of database: 140,377
effective HSP length: 57
effective length of query: 234
effective length of database: 115,924
effective search space: 27126216
effective search space used: 27126216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)