GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004159-TA|BGIBMGA004159-PA|IPR000228|RNA 3'-terminal
phosphate cyclase, IPR013796|RNA 3'-terminal phosphate cyclase, insert
region, IPR013792|RNA 3'-terminal phosphate cyclase/enolpyruvate
transferase, alpha/beta
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    72   1e-13
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.5  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   9.5  

>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 26/294 (8%)

Query: 14  TQLEFKPGKIRGGHYVADTRTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQID 73
           T   ++PG I GG  V D  T   I   L+  L   + A  P +L L G T++     +D
Sbjct: 70  TSFIYRPGNIIGGRVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIGVD 129

Query: 74  YM-TEVFKHAVKHF--GVDFNLTIHRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAA 130
            + T V     K F  G +  L I +RG  P GGG V      ++  ++    R  E   
Sbjct: 130 VLRTSVLPSLQKRFQVGDELELRILKRGSAPGGGGEVNFLCPVIK--ESLPPIRLSEFGR 187

Query: 131 VYGWSYVAGCLPIKMAYS--MADGAKEKLRGICKNIHI--------ECYKE---ETQLTS 177
           V+    +A    +  A++  + + A+  L     ++ I        EC         L +
Sbjct: 188 VFRIRGIASSTRVSPAFANRLVESARGVLNPFIPDVFIYTDVRRGDECGNSPGYSITLVA 247

Query: 178 KLSSGYILGGDALGKRGVDAVEVGRTAGEMLRDAIRSGACVDSYTQDQLIVYMAL-ADGR 236
           + + G     +  G+ G    +VG    + L + I SG CVD YTQ   +  M L ++  
Sbjct: 248 ETNKGCSYAAEHCGEAGETPEDVGSFCAKKLLEVIESGGCVDPYTQPSTLTGMLLSSEDV 307

Query: 237 SRVRVGEITLHTRTAIHFAELIAKAKFSI-----QPDGDQNVIECDGAGYHNRN 285
           + + VG++ + ++  +   ++  KA F+      + +  Q  + C G GY N N
Sbjct: 308 NTIVVGQLGITSQLVVFLRDV--KALFNCEYRFKELESGQVEMSCLGKGYLNVN 359


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 132  YGWSYVAGCLPIKMAYSMADGAK 154
            YGW Y+      K  Y+ ADG K
Sbjct: 1174 YGWGYILTRAEKKAYYTAADGTK 1196


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 218 VDSYTQDQLIVYMALADG 235
           +D+ T+DQ+ +YMAL  G
Sbjct: 77  MDTVTEDQMAIYMALLGG 94


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,566
Number of Sequences: 5004
Number of extensions: 45357
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 3
length of query: 288
length of database: 2,362,478
effective HSP length: 72
effective length of query: 216
effective length of database: 2,002,190
effective search space: 432473040
effective search space used: 432473040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)